- Created directions and the Entromics shell flowchart
- http://www.sis.pitt.edu/~pdudas/BloggerFiles/Entromics%20Shell%20Directions.doc
- http://www.sis.pitt.edu/~pdudas/BloggerFiles/Entromics%20Shell%20FlowChart.doc
** Note **
Entromics.sh will now be numbered to make reading the posts and updates easier.
- Entromics.sh is now.... Entromics_1.0.sh
Noticed message that script is looking for R script. What happens if the script is NOT copied to the working directory?
ReplyDeleteWhat is needed: User should be able to choose if plots are generated or not.
After I saw the message, I copied whatever R I saw in the Applications sw, and run script on MANY small (401 bases) sequences. No error message, all computed jobs finished, but dagman created by the script is still running .... most probably something unfinished yet. I just realized that I should use _1.0.sh, so will re try to see if that will help.
Anyway, in general for projects like asthma, the plots are not needed - one might save some time by having choice NOT to generate them. Thanks.PP